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Installation

Although it is not mandatory, It is greatly advised to create a python environment for this project and install ADToolbox in that environment. Check for how to build and use python's virtual environments.

Note: In order to access all of the metagenomics funtionalities, you must have mmseqs2 installed and have it in your system's path. However, you can access other modules without installing mmseqs2.

There are severall methods that allow you to install or use ADToolbox:

  1. Install by cloning this repository:
git clone https://github.com/chan-csu/ADToolbox.git
cd ADToolbox
pip install .

Or if you wish to install in editable mode (contribute to the developemnt), run the following:

git clone https://github.com/chan-csu/ADToolbox.git
cd ADToolbox
pip install -e .
  1. Install using pip
Not available yet
  1. Use docker
Not available yet
  1. Click bellow:
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